PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022238-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 367aa    MW: 41119.4 Da    PI: 6.4115
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022238-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36571472101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d++++++isw++ g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll
  PSME_00022238-RA  57 FLIKTYQLVDDSNTDDIISWNDAGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFSNEFFRKGEKQLL 140
                       9*****************************************************************99.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  PSME_00022238-RA 141 SEIHRRK 147
                       *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3748140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5853146IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.91E-3454146IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-205780IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3157146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434096120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-20108120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
AFECFWRFSS FLSVLFLCYS EDCTVELSGG AMAQSAKQNN DVALVTVESH RSVPAPFLIK  60
TYQLVDDSNT DDIISWNDAG TTFIVWRPAE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI  120
VPDRWEFSNE FFRKGEKQLL SEIHRRKGLI QPPPPPENRS ISPSNSADEQ TWSSTSSPNS  180
SSGVEALSHK NAMEENEKLK NENRVLVSEL TQMKKLHSQL LLFLSKHVNI PSADHVASFL  240
SQSVGPSEGL SMLARLKDYL EQYGGEEISK DFPGISLSSG VSVVNDDPFV SSSAKETMAA  300
KRLPFVDGAC REMGRKSYLS VKIEDDDEKE IPKLFGVPLV PSKRPLPVSN DNGKPEPIIR  360
KIGRCTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-235214625129Heat shock factor protein 1
5d5v_B2e-235214625129Heat shock factor protein 1
5d5v_D2e-235214625129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1127770.0BT112777.1 Picea glauca clone GQ03320_N17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269874.16e-73PREDICTED: heat shock factor protein HSF24
RefseqXP_010919270.11e-72PREDICTED: heat stress transcription factor B-2c-like
SwissprotP223351e-67HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0D6R3L91e-167A0A0D6R3L9_ARACU; Uncharacterized protein
STRINGVIT_18s0001g10380.t015e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-60heat shock transcription factor B4